I have sent an email to JMicron. There is an answer:

The JMC25x/JMC26x Gigabit Ethernet Chip was mass production at 2008Y, at that 
time, the IEEE802.3az specification wasn’t ready. So this chip will have a 
connection issue while connecting to all the IEEE 802.3az enabled devices, that 
is, if the ‘Speed & Duplex’ feature sets to ”Auto Negotiation” mode or 
”1Gbps/Full Duplex” mode, then the link function is abnormal, i.e. link down. 
Therefore our S/W engineer made a workaround - ASD(Auto-Speed-Down) function to 
force the LAN speed keeping in 100Mbps when the ‘Speed & Duplex’ feature has 
been set to “Auto Negotiation” mode or ”1Gbps/Full Duplex” mode.
 My suggestion is to use non-IEEE802.3az Gigabit equipment then your connection 
speed would keep as 1Gbps.

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https://bugs.launchpad.net/bugs/1497005

Title:
  197b:0250 JMicron JMC250 Gigabit ethernet doesn't work

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