After reading again Set Hallstrom's post I looked at my

      /usr/share/applications/defaults.list and found it had
      inode/directory=nautilus-folder-handler.desktop

As I do not have Nautilus on my system I changed the inode/directory entry to 
point to PCManFM but that change had no effect.
I then investigated the default applications using lxsession-default-apps and 
found the default file manager unset so set it to PCManFM. That appears to have 
resolved my issue, now when I click "Show in File Manager" the folder opens in 
PCManFM.
So perhaps the cause of this problem is the uninstallation of Nautilus which 
leaves the system with no default file manager set.

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https://bugs.launchpad.net/bugs/1196339

Title:
  Firefox "Open Containing Folder" opens Audacious instead of File
  Manager

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