I'm having this problem too. It occurred in feisty and is still present
on a clean and updated install of gutsy tribe 5. It seems to only apply
to videos using the H.264 codec, and I've seen the green area artefacts
in both mp4 and mkv files that used this codec. The same videos display
correctly in mplayer and VLC player.

The green areas almost always start at the left side of the screen, and
usually just affect one small square.

It looks like the same problem exists when using xine.

https://bugs.launchpad.net/ubuntu/+source/xine-lib/+bug/123476

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Whole areas of green pixels in totem  
https://bugs.launchpad.net/bugs/135131
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