OK, so after some research I found the following:
I have SSD caching enabled in Windows, but through a program called 
ExpressCache not Intel RST. It comes bundled with Sandisk SSDs.
https://www.condusiv.com/partners/oem/technologies/expresscache/
http://www.sandisk.com/products/software/express-cache/
 
It seems that ExpressCache does not require the SATA configuration mode be set 
to RAID.
https://forums.lenovo.com/t5/tkb/articleprintpage/tkb-id/ideaPad@tkb/article-id/424

I've attached a screenshot of the cache info for ExpressCache on my machine.
 
I also installed Intel RST software and there was no option to "accelerate", 
probably because there is no RAID mode. Strangely enough, Intel RST driver is 
also included in the drivers page for my laptop.

Anyway, I think what I can try now is uninstall ExpressCache or stop SSD
caching somehow and see if this fixes the problem and maybe reinstall it
afterwards. However, I don't know if this could break the system in any
way. And if I disabled SSD caching, will I be able to use the SSD as
storage device ?

** Attachment added: "expressCache.png"
   
https://bugs.launchpad.net/ubuntu/+source/ntfs-3g/+bug/1280574/+attachment/3986043/+files/expressCache.png

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https://bugs.launchpad.net/bugs/1280574

Title:
  Files modified on NTFS partition are seen as corrupted files in
  Windows

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