you may need to change the setting in the right /etc/pam.d/file .
Must say I tried it (common-session and sudo) but it did not work for me.
I tried :
*        -        nofile        8192
root        -        nofile        8192
The * one does not work, the one with root only works for root.
Shouldn't the * be activated for all users?

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https://bugs.launchpad.net/bugs/65244

Title:
  ulimits not set according to /etc/security/limits.conf for root -
  update documentation

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