as per your :
[    0.000000] Your BIOS doesn't leave a aperture memory hole
[    0.000000] Please enable the IOMMU option in the BIOS setup
[    0.000000] This costs you 64 MB of RAM
...
[    0.338295] mtrr: your CPUs had inconsistent variable MTRR settings
[    0.338296] mtrr: probably your BIOS does not setup all CPUs.

Hence, as per 
http://support.asus.com/download.aspx?SLanguage=en&m=M4A89GTD%20PRO/USB3&os=29 
an update is available for your BIOS (3029). If you update to this following 
https://help.ubuntu.com/community/BiosUpdate , does it change anything? If it 
doesn't, could you please both specify what happened, and just provide the 
output of the following terminal command:
sudo dmidecode -s bios-version && sudo dmidecode -s bios-release-date

For more on BIOS updates and linux, please see
https://help.ubuntu.com/community/ReportingBugs#Bug_reporting_etiquette
.

Thank you for your understanding.

** Tags added: bios-outdated-3029

** Changed in: linux (Ubuntu)
   Importance: Undecided => Low

** Changed in: linux (Ubuntu)
       Status: Confirmed => Incomplete

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https://bugs.launchpad.net/bugs/1103187

Title:
  xfs left inconsistent after reboot, causing grub to fail

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