Check if the webappsstore.sqlite database is not corrupted or broken
(you can find it in your profile directory):

$ sqlite3 webappsstore.sqlite
sqlite> select * from webappsstore2;

this will return all results for localstorage. if no result is returned,
firefox must have purged it for no reason.

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https://bugs.launchpad.net/bugs/1260229

Title:
  FF 26 Update resets HTML5 webapps configuration

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