I had the same problem.

The sollution that worked for me was 
- starting up with the usb,
- dowloading boot-repair
- starting boot repair, using advanced options -> it points efi out, and 
suggest to repair the system partition.

It may work as a workaround.

Proper check by expert user required for suitability

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https://bugs.launchpad.net/bugs/1222017

Title:
  [Asus SABERTOOTH 990FX R2.0] UEFI GRUB Fails After 13.10 Beta1
  Installation

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