I experience similar problems when selecting an workspace on a different 
mountpoint than the eclipse application files reside.
Is there any similarity to this bug?

I could post the error report which gets generated on a crash - if it's
useful for someone...

BTW: I'm Using Eclipse Juno 4.2.2 with Oracle JRE 6.0_26

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https://bugs.launchpad.net/bugs/885008

Title:
  Openjdk crashing Eclipse when changing from default workspace

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