Transmission doesn't have the power to ignore a killall command. The
most likely issue here is that Linux isn't closing the process until it
finishes the disk IO.

If long waits for disk IO is the issue, there are a few common causes
(1) slow disk connections, such as an external USB drive; (2) encrypted
filesystems, (3) using NTFS. These aren't the only reasons but the most
common.

That said, there has been work in upstream bug #5168 on reducing GUI
freezes during disk IO. Linking that here.

** Bug watch added: Transmission Trac #5168
   http://trac.transmissionbt.com/ticket/5168

** Also affects: transmission via
   http://trac.transmissionbt.com/ticket/5168
   Importance: Unknown
       Status: Unknown

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https://bugs.launchpad.net/bugs/884535

Title:
  Transmission "freezes" after partly downloading a portion of a 4+GB
  torrent

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