My 10periodic has the following lines:

APT::Periodic::Update-Package-Lists "1";
APT::Periodic::Download-Upgradeable-Packages "0";
APT::Periodic::AutocleanInterval "0";

The system is also a clean 12.04, running within a vbox.

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https://bugs.launchpad.net/bugs/803709

Title:
  last message on the screen at shutdown is "Checking for running
  unattended-upgrades:"

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