I am not familiar with the design of the aptdaemon. I just see the message each 
time before the reboot, and thus I think that the aptdaemon plays a role in the 
process. 
The way I understand is that apt may request a reboot (eg after kernel upgrade) 
and that a sequence triggered by the rtkit message gets the aptdaemon to do 
something.
In my understanding, I see the rtkit message (which was not present a few 
months ago) as the initial trigger.

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https://bugs.launchpad.net/bugs/1052323

Title:
  [regression][lucid] system frequently reboots after update in august
  2012, path via rtkit and AptDaemon

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