You can make a file with your settings hardcoded into it and then make
the file executable.

To get it to execute when you reboot, you would make an autostart file
for the executable file you just made in usr/share/applications.

I have a blog "walkthrough"-ish, to help others with this sort of
problem.

I really wanted to disable to tap-to-click.

http://thismagpie.blogspot.co.uk/2012/07/finally-how-i-permanently-
disabled-tap.html

I would like to help develop a proper fix for the touchpad settings
management though, as it is quite a crude fix.

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https://bugs.launchpad.net/bugs/926401

Title:
  Trackpad settings don't persist beyond reboot

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