Please find the information following
https://help.ubuntu.com/community/DebuggingIRQProblems

The different boot parameters did not have an effect. It looks all pretty much 
the same and the HDD did not have been auto mounted at any time. 
I used this mainline kernel for the tests: 
/~kernel-ppa/mainline/v3.6-rc1-quantal

1.) boot parameter: noapic
$ dmesg
[  145.337053] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[  165.524541] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[  165.728367] usb 4-1: device not accepting address 2, error -62
[  185.712049] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  185.712055] hub 4-0:1.0: couldn't allocate port 1 usb_device
[  205.951502] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  205.951509] hub 3-0:1.0: couldn't allocate port 1 usb_device
$ lsusb
Bus 004 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
Bus 003 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 002 Device 003: ID 05af:0408 Jing-Mold Enterprise Co., Ltd 
Bus 002 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 001 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub

2.) boot parameter: pci=routeirq
$ dmesg
[  136.971610] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[  157.169186] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[  157.373121] usb 4-1: device not accepting address 2, error -62
[  177.366759] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  177.366767] hub 4-0:1.0: couldn't allocate port 1 usb_device
[  197.488361] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  197.488368] hub 3-0:1.0: couldn't allocate port 1 usb_device
$ lsusb
Bus 004 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
Bus 003 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 002 Device 003: ID 05af:0408 Jing-Mold Enterprise Co., Ltd 
Bus 002 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 001 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub

3.) boot parameter: pci=noacpi
$ dmesg
[   75.733484] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[   95.920969] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[   96.124784] usb 4-1: device not accepting address 2, error -62
[  116.108441] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  116.108449] hub 4-0:1.0: couldn't allocate port 1 usb_device
[  136.219975] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  136.219982] hub 3-0:1.0: couldn't allocate port 1 usb_device
$ lsusb
Bus 004 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
Bus 003 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 002 Device 003: ID 05af:0408 Jing-Mold Enterprise Co., Ltd 
Bus 002 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 001 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub

4.) boot parameter: acpi=off
$ dmesg
[  106.242071] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[  126.440188] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[  126.644126] usb 4-1: device not accepting address 2, error -62
[  146.638303] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  146.638308] hub 4-0:1.0: couldn't allocate port 1 usb_device
[  166.760442] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  166.760447] hub 3-0:1.0: couldn't allocate port 1 usb_device
$ lsusb
Bus 004 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
Bus 003 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 002 Device 003: ID 05af:0408 Jing-Mold Enterprise Co., Ltd 
Bus 002 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 001 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub

5.) boot parameter: acpi=off
$ dmesg
[   75.349737] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[   95.537224] xhci_hcd 0000:03:00.0: Timeout while waiting for address device 
command
[   95.741061] usb 4-1: device not accepting address 2, error -62
[  115.724733] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  115.724741] hub 4-0:1.0: couldn't allocate port 1 usb_device
[  135.836259] xhci_hcd 0000:03:00.0: Timeout while waiting for a slot
[  135.836268] hub 3-0:1.0: couldn't allocate port 1 usb_device
$ lsusb
Bus 004 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
Bus 003 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 002 Device 003: ID 05af:0408 Jing-Mold Enterprise Co., Ltd 
Bus 002 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 001 Device 002: ID 8087:0024 Intel Corp. Integrated Rate Matching Hub
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub

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https://bugs.launchpad.net/bugs/1031982

Title:
  174c:5106 USB 3.0 port does not work with external hard disk

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