flash-kernel doesn't necessarily know how to change the kernel cmdline.
This is extremely platform specific and might often change with user-
configured changes.  Consider that flash-kernel has to support RedBoot
and U-Boot based platforms and that the kernel cmdline args are in the
bootloaders' config in flash.  The cmdline args might have been changed
by the end-user, and it's hard to patch them in place just to set root.
The approach of forcing the rootfs in the initrd is at least reliable
and consistent across supported platforms.

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https://bugs.launchpad.net/bugs/1026780

Title:
  3.0~rc.4ubuntu4 doesn't honor bootargs from /boot/boot.script anymore

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