This should be handled by dpkg.
** Changed in: aptdaemon (Ubuntu)
Status: New => Won't Fix
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https://bugs.launchpad.net/bugs/435239
Title:
package aptdaemon 0.10+bzr240-0ubuntu1 failed to install/upgrade:
trying to overwrite «/etc/apt/apt.conf.d», which is also in package
debconf 0:1.5.27ubuntu1
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