Here's a hint, what could have gone wrong when updating to kernel 2.6.20-16:
http://ubuntuforums.org/showthread.php?t=457328&page=3
They say, that it's the missing linux-restricted-modules-2.6.20-16 that causes 
atheros to disappear.
I really don't have linux-restricted-modules-2.6.20-16  installed, but 
unfortunately I can't find them in Adept.

-- 
Atheros 5005 permanently disappears all of a sudden 
https://bugs.launchpad.net/bugs/117029
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