Exactly the same happens here with Transmission,  qBittorrent and Deluge 
(Ubuntu 11.10 32 bits with all updates, hardware Lenovo Thinkpad X200).
A old dicussion of this (Karmic) can be seen at 
https://bugs.launchpad.net/ubuntu/+source/ecryptfs-utils/+bug/431975.
My workaround: create a folder /home/BT (non encrypted), adjust permissions and 
download torrents to it.

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https://bugs.launchpad.net/bugs/888497

Title:
  Transmission dies with 100% CPU, killing results in zombie process

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