I verified with Quassel IRC, as I had it installed on the system already. 
Mentions of your nickname trigger alerts by default in Quassel.
I originally observed the issue with my own Qt software. If you happen to have 
python-pyside installed on the system, this script is sufficient to demonstrate 
the issue: http://pastebin.com/83HkQCSp

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https://bugs.launchpad.net/bugs/920727

Title:
  Alert highlight/flash not functional for all windows

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