I have the same problem with dkms for my wifi driver that I compiled
from a tarball. It works when I install it but it stops working when I
upgrade the kerenl. The logs show that it was built successfully but it
used the wrong headers. I haven't tried removing my headers because I
don't want to have to remove my headers every time the update-manager
upgrades my kernel. The whole point of using dkms was to automate the
processes. If I have to remove my headers everytime that doesn't
automate the process.

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https://bugs.launchpad.net/bugs/790558

Title:
  dahdi kernel module built for wrong kernel version

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