It's actually not a problem with update-manager. The problem is with
shared-mime-info configuration. I have to rewrite
/usr/share/mime/packages/freemind.xml

<?xml version="1.0" encoding="UTF-8"?>
<mime-info xmlns='http://www.freedesktop.org/standards/shared-mime-info'>
        <mime-type type="application/x-freemind">
                <comment xml:lang="en">FreeMind Mindmap</comment>
                <glob pattern="*.mm"/>
        </mime-type>
</mime-info>

-- 
[apport] package shared-mime-info failed to install/upgrade: 
https://bugs.launchpad.net/bugs/114241
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