I'm using Linux for about six years so I know where settings are kept, and I 
didn't remove them ;)
Some folders in /home/user/.gnome2 became empty after disk was full surely 
gedit and mozilla settings. All plugins from seamonkey gone. It was very 
strange because I was not even using seamonkey at that time - I closed it and 
then afer running again there was only default settings (bookmarks were kept 
but all plugins were missing). Gedit kept plugins but plugins settings was gone 
(snippets) ... . There wasn't any information in GNOME - just data loss. Also 
Ardour settings gone. It was surely some problems in .gnome2 hidden folder, but 
not every application lost it's settings so it's really strange. I think it 
might be a problem when disk is full and application, for ex. seamonkey or 
gedit is trying to save settings but there's no space on the disk, so the old 
settings are removed and the new cannot be saved. If problem will not be 
localized I think it'll be a good idea to include in default installation some 
disk monitor tool.

>From the syslog:
May  4 08:59:20 adam kernel: [73279.382000] scsi 2:0:0:0: rejecting I/O to dead 
device
May  4 08:59:20 adam kernel: [73279.382000] scsi 2:0:0:0: rejecting I/O to dead 
device
May  4 08:59:20 adam kernel: [73279.383000] scsi 2:0:0:0: rejecting I/O to dead 
device
May  4 08:59:20 adam kernel: [73279.383000] scsi 2:0:0:0: rejecting I/O to dead 
device
May  4 08:59:20 adam kernel: [73279.384000] scsi 2:0:0:0: rejecting I/O to dead 
device
May  4 08:59:20 adam kernel: [73279.384000] scsi 2:0:0:0: rejecting I/O to dead 
device
May  4 08:59:20 adam kernel: [73279.385000] scsi 2:0:0:0: rejecting I/O to dead 
device
May  4 08:59:20 adam kernel: [73279.385000] scsi 2:0:0:0: rejecting I/O to dead 
device

There was no errors on the disk, after freeing space everything was
working fine.

lspci:
00:00.0 Host bridge: Intel Corporation 82845 845 (Brookdale) Chipset Host 
Bridge (rev 04)
00:01.0 PCI bridge: Intel Corporation 82845 845 (Brookdale) Chipset AGP Bridge 
(rev 04)
00:1d.0 USB Controller: Intel Corporation 82801CA/CAM USB (Hub #1) (rev 02)
00:1d.1 USB Controller: Intel Corporation 82801CA/CAM USB (Hub #2) (rev 02)
00:1d.2 USB Controller: Intel Corporation 82801CA/CAM USB (Hub #3) (rev 02)
00:1e.0 PCI bridge: Intel Corporation 82801 Mobile PCI Bridge (rev 42)
00:1f.0 ISA bridge: Intel Corporation 82801CAM ISA Bridge (LPC) (rev 02)
00:1f.1 IDE interface: Intel Corporation 82801CAM IDE U100 (rev 02)
00:1f.3 SMBus: Intel Corporation 82801CA/CAM SMBus Controller (rev 02)
00:1f.5 Multimedia audio controller: Intel Corporation 82801CA/CAM AC'97 Audio 
Controller (rev 02)
00:1f.6 Modem: Intel Corporation 82801CA/CAM AC'97 Modem Controller (rev 02)
01:00.0 VGA compatible controller: ATI Technologies Inc Radeon Mobility M7 LW 
[Radeon Mobility 7500]
02:00.0 CardBus bridge: Texas Instruments PCI1520 PC card Cardbus Controller 
(rev 01)
02:00.1 CardBus bridge: Texas Instruments PCI1520 PC card Cardbus Controller 
(rev 01)
02:02.0 Network controller: Atheros Communications, Inc. AR5212 802.11abg NIC 
(rev 01)
02:08.0 Ethernet controller: Intel Corporation 82801CAM (ICH3) PRO/100 VE (LOM) 
Ethernet Controller (rev 42)
07:00.0 USB Controller: ALi Corporation USB 1.1 Controller (rev 03)
07:00.1 USB Controller: ALi Corporation USB 1.1 Controller (rev 03)
07:00.3 USB Controller: ALi Corporation USB 2.0 Controller (rev 01)
07:00.4 FireWire (IEEE 1394): ALi Corporation M5253 P1394 OHCI 1.1 Controller

-- 
Data loss when disk full in GNOME!
https://bugs.launchpad.net/bugs/112383
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Bugs, which is the bug contact for Ubuntu.

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