####@****:~$ aptd
02:41:59 AptDaemon [INFO]: Initializing daemon
Traceback (most recent call last):
  File "/usr/sbin/aptd", line 28, in <module>
    aptdaemon.core.main()
  File "/usr/lib/python2.7/dist-packages/aptdaemon/core.py", line 2004, in main
    daemon = AptDaemon(options, bus=bus)
  File "/usr/lib/python2.7/dist-packages/aptdaemon/core.py", line 1251, in 
__init__
    do_not_queue=True)
  File "/usr/lib/pymodules/python2.7/dbus/service.py", line 129, in __new__
    retval = bus.request_name(name, name_flags)
  File "/usr/lib/pymodules/python2.7/dbus/bus.py", line 306, in request_name
    'su', (name, flags))
  File "/usr/lib/pymodules/python2.7/dbus/connection.py", line 630, in 
call_blocking
    message, timeout)
dbus.exceptions.DBusException: org.freedesktop.DBus.Error.AccessDenied: 
Connection ":1.92" is not allowed to own the service "org.debian.apt" due to 
security policies in the configuration file
*////

I am not sure whether the previous is a good thing, but the error did
not appear again; I was able to preform a simple apt-get update without
any errors.

My advice to you is to simply reboot, and do the exact thing you did to
get the error then report back. I am sure someone will know what and how
to deal with the bug.

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https://bugs.launchpad.net/bugs/780076

Title:
  <type 'exceptions.SystemError'>: E:Method  has died unexpectedly!, E
  :Sub-process  returned an error code (100), E:Method
  /usr/lib/apt/methods/ did not start correctly

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