this affects me as well. every time i open monodevelop, the panels
disappear, sometimes straight away, sometimes when i close monodevelop.
monodevelop seems to cast an edge shadow over the panels in a way that
other windows dont, maybe this is related.

also possibly related is the fact that my panels are set to be slightly
transparent, which i don't want to give up. i would be interested to
know if the original poster has transparent panels?

the panels are still there, but invisible. i can still open the menu and
open the terminal. i type

killall gnome-panel

and the panels restart, and it's back to normal.

im using 10.04 lucid, with metacity not compiz. however, i have checked
the "compositing manager" box in the metacity settings in gconf-editor
so that i get true transparency in my terminal which also matters to me.

hopefully some or all of this is useful.

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https://bugs.launchpad.net/bugs/778407

Title:
  Sometimes when you open the solution file disappear GNOME panel, and
  all icons from my desktop

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