I've got the exact same issue, it seems.

Started out bad; had the e7xxx module throwing errors into syslog about
every second, so I fixed that.  Went through the sysv-rc-conf and killed
all the services I didn't need.  Blacklisted the modules I didn't need.
The problem got much better, but there was still that blink.

swapoff - no difference
stop hal - disk stopped accessing every second.

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Random disk access, every second every day
https://bugs.launchpad.net/bugs/35449
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