I have a near-identical issue. During boot, this gets logged:

named[770]: could not get query source dispatcher (2001:xxxx:xxxx:xxxx::xxx#0)
named[770]: loading configuration: address not available
named[770]: exiting (due to fatal error)

Manually starting BIND fixes the issue.

This is the named.conf line in question:
query-source-v6 address 2001:xxxx:xxxx:xxxx::xxx port *;

I believe it's because the IPv6 address is marked 'tentative' while the
IPv6 duplicate-address-detection process is in progress, and BIND is
starting before it's finished.

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https://bugs.launchpad.net/bugs/510587

Title:
  Bind/named does not initialize on boot due to missing IPv6 address

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