Reverting that patch did not fix the problem on my machine.  :\

My problems not just limited to USB3 ports.  USB2 ports, like the one my
keyboards connected to, don't work at all with the current kernel (and
thus I'm back on 2.6.39-0 again).

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https://bugs.launchpad.net/bugs/779826

Title:
  USB3 devices stopped working after kernel upgrade.

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