Things have changed slightly:

I implemented Mikkel's suggestion of setting the version to -1 just
before an upgrade, and back to it's correct value afterwards. This is
only useful if an upgrade is killed: the upgrade can also fail due to a
raised OperationalError. If that is the case (regardless of whether or
not the corruption comes from a bad database creation), we allow the
code to fall through the statements in create_db, which safely restores
the database.

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https://bugs.launchpad.net/bugs/660307

Title:
  zeitgeist fails to run if its database structure is not complete

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