I had this issue but as Omer said, it appears that when Chrome is set as the default browser from within chrome it doesn't update the gnome defaults. After running the "gnome-default-applications-properties" application and set it manually after which it all worked as expected.
-- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/576734 Title: Empathy does not honor default browser when clicking URLs in chat -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs