Same issue, but the settings, if it matters, are set through Synclient,
and it's only the right corner clicks and the one, two, and three finger
tap events that are reset. All other settings persist, whether set
through the GUI or (when this is not available) via startup script.

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https://bugs.launchpad.net/bugs/588973

Title:
  Touchpad settings reset suspend/hibernate/resume

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