Thanks for the response. I tried rebuilding the kernel but got to an
error (compiling) where it says I'm missing the ahci, ahci_platform and
libahci modules. How do I solve these?

As a comment, I changed both "CONFIG_SATA_AHCI=y " and
"CONFIG_SATA_AHCI_PLATFORM=y" options , which are located in two
different config files: config.common.ports and config.common.ubuntu
(did not know if I should change both of those files or just the ubuntu
one, but did just in case...).

Also both files are located on debian.master/config/ (not on the
config.flavour.* file in the given ARCH folder, as is suggested on a
previous post).

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https://bugs.launchpad.net/bugs/595448

Title:
  Slow boot caused by SATA controller reset

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