Sorry not too sure. I'd suggest waiting until the fixes are released and then 
see if the problem is still there, as this issue may just be one symptom of 
another issue.
The fix for the software centre issue component of this bug will be available 
in the next release of Software Center. As per my post above, I've filed 
another bug LP: #729543 for the gnome-do.desktop file problem.

** Branch unlinked: lp:~aaronp/software-center/fix-728896

** Changed in: software-center (Ubuntu)
       Status: In Progress => Fix Committed

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https://bugs.launchpad.net/bugs/728896

Title:
  No handlers found for logger "softwarecenter.db.update"

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