I'm also having files replaced by outdated versions. This is very anoying! I 
have lost a day of work because of that  
I'm not sure how this happens but here are some log files in attachment. Some 
files that have been replaced:

Doutorado/ArtigoNECO/references.bib
Doutorado/ArtigoNECO/neural-modules-for-false-memory.tex

In syncdeamon.log I believe we can see the moment when "references.bib"
got replaced by an outdated version:

2011-01-04 13:22:07,437 - ubuntuone.SyncDaemon.sync - INFO - T:SERVER:F 
4584bb40-fcbb-4d3c-84cf-06388504f53a 
['5d618247-290a-48cd-be52-59f0f9f63385'::'c3455292-8f46-4c2a-b358-f03202ef69cb']
 ''Doutorado/ArtigoNECO/references.bib'' | Calling commit_file (got 
AQ_DOWNLOAD_FINISHED:{'hash_eq_local_hash': 'F', 'hash_eq_server_hash': 'T'})
2011-01-04 13:22:07,450 - ubuntuone.SyncDaemon.sync - INFO - T:NONE:F 
4584bb40-fcbb-4d3c-84cf-06388504f53a 
['5d618247-290a-48cd-be52-59f0f9f63385'::'c3455292-8f46-4c2a-b358-f03202ef69cb']
 ''Doutorado/ArtigoNECO/references.bib'' | Called commit_file (In: T:SERVER:F)

I'm telling this because I worked on these files the day before.

There are also some exceptions related with the folder in attached
files.

** Attachment added: "log.zip"
   
https://bugs.launchpad.net/ubuntu/+source/ubuntuone-client/+bug/553653/+attachment/1784015/+files/log.zip

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https://bugs.launchpad.net/bugs/553653

Title:
  Ubuntu One replaced a new file with an OLD one, erasing changes and progress 
I had made.

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