I've had the same problem after using the "Repair broken package" option from 
the restore console. 
This command saved me and restored my Gnome environment like it should be :

$ sudo rm -rv ~/.gconf/

Then you'll need re-apply your Gnome theme and Compiz, if you made any
modification to the default conf.

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https://bugs.launchpad.net/bugs/668641

Title:
  GNOME does not load theme after innstalling NVIDIA non-free driver

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