Not sure if it helps to debug this bug but I had same issue with Debian
Squeeze where two buttons reseted xset settings: Fn+Down and Fn+Up (lcd
brightness). I solved it by disabling HAL in debian, however as far as I
know Ubuntu 10.04 should not use HAL any more.

However one side-note, after HAL disable, xev start showing different
keycode in some reason. So in my case with HAL I was using "xset  -r
236", after (without HAL) it was "xset -r 237".

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Using multimedia/function keys clears xset repeat settings
https://bugs.launchpad.net/bugs/554839
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