I have a similar problem in baobab 2.30.0. 
I started baobab from root terminal to be sure that all directories are 
counted. But it seems that instead of counting all directories, some of 
subdirectories from my /home/lukasz directory are ignored! (see attachment)

** Attachment added: "screens.tar.gz"
   http://launchpadlibrarian.net/52488810/screens.tar.gz

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Baobab reports incorrect sizes
https://bugs.launchpad.net/bugs/341141
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