libGL.so is provided by multiple packages: mesa, nvidia, ati. In the
past, it used to use the alternatives system to select the GL library.
The current approach since (and including) lucid is to install a
configuration file in /etc/ld.so.conf.d that instructs the linker to
look in /usr/lib/$PROVIDER. It sounds like these packages have a fixed
library search path.

I don't know if there's an easy workaround besides the provided one.

-- 
Unable to resolve function glX...
https://bugs.launchpad.net/bugs/589250
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