Accepting that my bug duplicates this one, then it's not specific to the
video driver (mine is an Nvidia GEForce MX 4000).

Removing compiz as Davide suggests fixed it for me also. I'd suspect a
race condition involving compiz and gnome-panel, and perhaps all these
other variables are just things that affect the timing.

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Panel utilities not shown on startup using Matrox gfx
https://bugs.launchpad.net/bugs/572550
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