Same problem here. Multiple ata1.00 errors even when pc is idle.
GA-E7AUM-DS2H motherboard.
One disk already is dead (Seagate) - it was on Jaunty. 
The next was going down (WD) on 10.04 fresh minimal install with nvidia 
proprietary drivers. 
Switching off AHCI from bios worked for me as well.
Multiple reports about this issue:
https://bugs.launchpad.net/ubuntu/+bug/353812
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/217920
http://www.nvnews.net/vbulletin/showthread.php?t=126152

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Frequent ATA errors and disk corruption
https://bugs.launchpad.net/bugs/539467
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