Can you please try running Eclipse on different workspace?

eclipse -data /new/workspace

I think that this should help. The problem for me seems to be some
character that Java IO cannot cope with.

You can also try using other vm like

eclipse -vm /usr/lib/jvm/java-6-sun/bin/java

If you succeed, please let us know.

-- 
Eclipse and pydev doesn`t work anymore after reboot
https://launchpad.net/bugs/94442

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