I realised that while my install was clean, my home directory was not (I
keep it on a separate partition).

I did a

sudo apt-get remove rhythmbox --purge

followed by a

apt-get install rhythmbox

and now it can see my iPhone. However it still isn't working quite yet -
there is another issue which I'm investigating...

-- 
rhytmbox cannot see my iphone
https://bugs.launchpad.net/bugs/539396
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