I have the exact same problem and I can assure that it's not a hardware
problem since I used numpad to check if the problem was caused by the
usb wireless mouse.

My graphics card is nvidia GeForce 6800LE with nvidia-glx-185 driver.
The install is a fresh and updated kubuntu 9.10 (2.6.31-19-generic).

I tried to disable compositing and play with focus settings but without
a result. Now I'm going to use a non-proprietary driver (or the
nvidia-173) to see if the problem remains. Maybe it's an X.org bug

Help is appreciated

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Mouse events fail frequently and unpredictably, requiring kwin restart
https://bugs.launchpad.net/bugs/505494
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