I have exactly the same problem now. Mouse pointer moves across the
screen, scrolling is OK on both axis (no problem with inverted axis) but
clicks are not detected.

I'm running a very recent install of 9.10 (install, no update from
previous version).

Is there a workaround?

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Bluetooth Mighty Mouse Left and Right Clicks do not register in 8.10
https://bugs.launchpad.net/bugs/319053
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