This bug was fixed in the package tomboy - 1.1.0-0ubuntu4

---------------
tomboy (1.1.0-0ubuntu4) lucid; urgency=low

  * debian/patches/04_app_indicator.patch
    - Don't open the search window on start, it should behave the same as
      without using the appindicator
    - Don't quit tomboy when closing the search window (LP: #503037)
  * debian/ltmain-as-needed.sh
    - bump version
 -- Ken VanDine <ken.vand...@canonical.com>   Thu, 07 Jan 2010 16:09:13 -0500

** Changed in: tomboy (Ubuntu)
       Status: In Progress => Fix Released

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Closing tomboy window quits tomboy (when using libappindicator)
https://bugs.launchpad.net/bugs/503037
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