On Karmic, I try to run IBM Java 6 and I have apparmor enabled for Firefox 3.5.
Testing with http://www.java.com/en/download/help/testvm.xml
On first try after starting Firefox, I see just grey window where applet output 
should be.
On reload/second try, firefox freezes.
After I put apparmor in complain mode, a message started to appear in the 
applet box:
"Error. Click for details" When clicked, "Java Console" window appears saying:
[...]
java.lang.StringIndexOutOfBoundsException
        at java.lang.String.substring(String.java:1092)
        at testvm2.Main.init(Main.java:79)
        at 
sun.plugin2.applet.Plugin2Manager$AppletExecutionRunnable.run(Plugin2Manager.java:1540)
        at java.lang.Thread.run(Thread.java:736)
Exception: java.lang.StringIndexOutOfBoundsException

Attached aa profile and ecerpt from kern.log

** Attachment added: "apparmor profile for firefox-3.5"
   http://launchpadlibrarian.net/37240837/usr.bin.firefox-3.5

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apparmor-profiles freezes Firefox when using Java applets (Sun JRE)
https://bugs.launchpad.net/bugs/484148
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