I experience the same problem. But when I copy files on local disk (I made a 
quick script to copy 100 times a file and check md5sum) everything is fine. But 
I have really often corrupted files (bad md5) since a while, and memcheck is OK.
I run karmic with 2.6.31-15-generic kernel, my data partition is an encrypted 
ext4 one.

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in-place corruption of large files *without fsck or reboot* reported with linux 
2.6.31-14.46 on ext4
https://bugs.launchpad.net/bugs/453579
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