I have the same issue using a Logitech MX1100 mouse on clean install of
Ubuntu 9.10, re-re-retired Dell Dimension 2400. Found a workaround, but
no fix: when the mouse stops responding (usually after switching back to
the KVM port the Linux box is connected to), I power the mouse off using
the switch on the bottom, then wait 5 secs or so, power back up. Has
worked every time so far. I was THIS close to scrapping Karmic for, I
dunno, anything? until I tried this. BTW, unplugging, right-clicking,
etc, never worked.

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Mouse focus gets stuck over control objects
https://bugs.launchpad.net/bugs/375905
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