Looking at the source code from http://packages.ubuntu.com/source/karmic
/notify-osd, there is an "orig" source package, and then a diff patch.
Is the original source package from debian? Would that package alone
without the diff patch from that page make it respect the timeout value
(I assume that the debian version, or whatever version that is without
ubuntu mods to it would?)? Does the patch above depend on the ubuntu
patch being applied?

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notify-send ignores the expire timeout parameter
https://bugs.launchpad.net/bugs/390508
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