@Xtien, this has to do with the new client side windows implemented in
the latest gtk+ release. This is breaking eclipse's swt-gtk bindings.
Setting GDK_NATIVE_WINDOWS turns off this new feature, thus fixing the
problem. But client side windows are actually pretty useful, so just
turning them off is not a viable long term solution. There is a patch to
fix this upstream in eclipse, and is scheduled for inclusion in 3.5.2.

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Buttons disappear or do not respond to mouse clicks in Eclipse
https://bugs.launchpad.net/bugs/443004
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