I hope that understand the problem exactly: you open gnome-app-install and then synaptic. afterwards you install a package in synapitc and g-a-i does not update it's app list?
** Changed in: gnome-app-install (Ubuntu)
Status: Unconfirmed => Needs Info
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Feature Request: make "add/remove programs" have visibility of synaptic
https://launchpad.net/bugs/72932
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